Resources

Genomes

Genome of the amphioxus B. floridae

This genome was the first chromosome-scale genome of an amphioxus obtained using HiC scaffolding (NCBI accession: GCF_000003815.2)

Assembly: Braflo_7u5tJ.fa

Annotation GTF: Braflo_7u5tJ.gtf

Predicted peptides: Braflo_7u5tJ_pep.fa

Genome of the sea urchin genome Paracentrotus lividus

The genome of the european sea urchin Paracentrotus lividus (NCBI accession: GCF_000003815.2)

Assembly: Pliv_PqN3S_sm.fa

Annotation GTF: BPliv_aH2p.filt.gtf

Predicted peptides: Pliv_ah2p_all.pep

Genome of the hagfish Eptretus atami

Reported in (1), the original assembly and annotation files can be downloaded on zenodo in this repository.

Genome of the brittle star Amphiura filiformis

Reported in our preprint, the original assembly and annotation files can be downloaded on zenodo in this repository.

Software

Snakemake pipeline for genome annotation developped with Elise Parey : https://github.com/eparey/AnnotateSnakeMake