Resources

Genomes

Species	Common name	NCBI accession	Assembly	GTF	Peptides
Branchiostoma floridae	Amphioxus	GCF_000003815.2	Braflo_7u5tJ.fa	Braflo_7u5tJ.gtf	Braflo_7u5tJ_pep.fa
Paracentrotus lividus	European sea urchin	GCF_000003815.2	Pliv_PqN3S_sm.fa	BPliv_aH2p.filt.gtf	Pliv_ah2p_all.pep
Leucoraja erinacea	Little Skate	GCF_028641065.1	Leri_hhj_sm_rev.fa	Leri_hhj_ah2pr.cl.gtf	Leri_hhj_ah2p.pep
Eptatretus atami	Hagfish	GCA_035128595.1	Zenodo	Zenodo	Zenodo: 10227719
Amphiura filiformis	Brittle star	GCF_039555335.1	Zenodo	Zenodo	Zenodo: 10785182
Paraspadella gotoi	Arrow worm	GCA_051294375.1	Zenodo	Zenodo	Zenodo: 13936459

Software

AnnotateSnakeMake

Snakemake pipeline for genome annotation developped with Elise Parey : https://github.com/eparey/AnnotateSnakeMake

PESCI (Pretty Easy Single-cell Comparisons using ICC)

Python tools developped by Elise Parey to compare single cell transcriptomic datasets across sepecies using the ICC algorithm: https://github.com/eparey/pesci